STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygbEPutative inner membrane protein; Similar to E. coli putative cytochrome oxidase subunit (AAC75791.1); Blastp hit to AAC75791.1 (107 aa), 66% identity in aa 1 - 107. (118 aa)    
Predicted Functional Partners:
yijF
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76926.1); Blastp hit to AAC76926.1 (205 aa), 67% identity in aa 1 - 203.
      
 0.896
yjgN
Putative inner membrane protein; Hypothetical protein in miaE 3'region (ORF x). (SW:YJGN_SALTY).
      
 0.896
yfbK
Putative von Willebrand factor, vWF type A domain protein; Similar to E. coli orf, hypothetical protein (AAC75330.1); Blastp hit to AAC75330.1 (575 aa), 45% identity in aa 22 - 190.
      
 0.891
yfbB
Putative enzyme; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).
      
 0.832
cysC
Adenosine 5'-phosphosulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.819
cysN
ATP-sulfurylase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.812
cysD
ATP-sulfurylase, subunit 1; Similar to E. coli ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2 (AAC75794.1); Blastp hit to AAC75794.1 (302 aa), 97% identity in aa 1 - 302.
  
  
 0.799
yqaA
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75736.1); Blastp hit to AAC75736.1 (142 aa), 90% identity in aa 1 - 141.
      
 0.761
ydeE
Similar to E. coli putative transport protein (AAC74607.1); Blastp hit to AAC74607.1 (395 aa), 76% identity in aa 1 - 395.
      
 0.680
yciW
Putative cytoplasmic protein; Similar to E. coli putative oxidoreductase (AAC74369.1); Blastp hit to AAC74369.1 (401 aa), 51% identity in aa 27 - 350.
      
 0.675
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.