STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqfASimilar to E. coli putative oxidoreductase (AAC75937.1); Blastp hit to AAC75937.1 (219 aa), 91% identity in aa 1 - 219. (219 aa)    
Predicted Functional Partners:
yidD
Putative inner membrane protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
      
 0.693
STM2617
Gifsy-1 prophage protein; Similar to antiterminator Q.
      
 0.659
yrbL
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76239.1); Blastp hit to AAC76239.1 (210 aa), 77% identity in aa 1 - 210.
    
 0.646
STM1033
Gifsy-2 prophage Clp protease-like protein; Similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29% identity in aa 73 - 203; Belongs to the peptidase S14 family.
      
 0.509
STM0912
Fels-1 prophage protease subunits of ATP-dependent proteases; Similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease; ClpP family members; heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29% identity in aa 73 - 203; Belongs to the peptidase S14 family.
      
 0.499
ybeX
Putative CBS domain-containing protein; Plays a role in the transport of magnesium and cobalt ions.
  
   
 0.477
yqfB
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75938.1); Blastp hit to AAC75938.1 (103 aa), 88% identity in aa 1 - 103; Belongs to the UPF0267 family.
       0.476
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity. It is able to utilize nicked circular duplex DNA as a template and can unwind the parental DNA strand from its template.
     
 0.473
ydfZ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74614.1); Blastp hit to AAC74614.1 (67 aa), 79% identity in aa 1 - 67.
      
 0.459
yghJ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75800.1); Blastp hit to AAC75800.1 (363 aa), 29% identity in aa 1 - 334.
      
 0.459
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.