STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM3073Putative ABC-type cobalt transport system; Permease component CbiQ and related transporter. (235 aa)    
Predicted Functional Partners:
STM3074
Putative ABC-type cobalt transport system; ATPase component; similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 38% identity in aa 74 - 207.
 0.999
STM3075
Putative ABC-type cobalt transport system; ATPase component; similar to E. coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); Blastp hit to AAC75475.1 (365 aa), 33% identity in aa 18 - 219.
 
 0.989
STM3072
Putative inner membrane protein.
 
  
 0.959
STM3071
Putative DNA-binding protein.
 
  
 0.871
cbiM
Synthesis of vitamin B12 adenosyl cobalamide precursor; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity.
  
 
 0.837
cbiO
Synthesis of vitamin B12 adenosyl cobalamide precursor; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Cobalt importer (TC 3.A.1.18.1) family.
  
 
 0.795
STM1258
Putative ATPase component of ABC-type transport system; Contains duplicated ATPase domain; putative ATPase (gi|2337945).
  
 
 0.702
yliA
Putative ATPase components of ABC-type transport system, contain duplicated ATPase domain; Part of the ABC transporter complex GsiABCD involved in glutathione import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Glutathione importer (TC 3.A.1.5.11) family.
  
 
 0.700
iroB
Putative glycosyl transferase; Related to UDP-glucuronosyltransferase.
  
     0.616
truA
Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.584
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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