Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqgBPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75976.1); Blastp hit to AAC75976.1 (48 aa), 73% identity in aa 6 - 46. (43 aa)    
Predicted Functional Partners:
ytgA
Putative inner membrane protein; Hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8). (SW:YTGA_SALTY).
      
 0.855
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
  
    0.779
yhiI
Similar to E. coli putative membrane protein (AAC76512.1); Blastp hit to AAC76512.1 (355 aa), 87% identity in aa 1 - 355.
      
 0.740
mviM
Virulence factor MVIM. (SW:MVIM_SALTY); Belongs to the Gfo/Idh/MocA family.
      
 0.724
ytfL
Similar to E. coli putative transport protein (AAC77175.1); Blastp hit to AAC77175.1 (447 aa), 91% identity in aa 1 - 447.
      
 0.720
pduV
Propanediol utilization protein PDUV. (SW:PDUV_SALTY).
      
 0.644
yqjF
Putative membrane-associated protein; Similar to E. coli orf, hypothetical protein (AAC76136.1); Blastp hit to AAC76136.1 (160 aa), 81% identity in aa 1 - 160.
      
 0.592
ydgF
Putative membrane transporter of cations and cationic drugs; Catalyzes the excretion of spermidine.
      
 0.541
yqgC
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75977.1); Blastp hit to AAC75977.1 (71 aa), 78% identity in aa 1 - 51.
       0.537
yihE
Putative homoserine kinase type II; A protein kinase that (auto)phosphorylates on Ser and Thr residues, probably involved in the extracytoplasmic stress response. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species (By similarity).
      
 0.514
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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