STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yghUPutative glutathione S-transferase; Similar to E. coli orf, hypothetical protein (AAC76025.1); Blastp hit to AAC76025.1 (304 aa), 91% identity in aa 17 - 303. (288 aa)    
Predicted Functional Partners:
yceD
Putative metal-binding protein; Plays a role in synthesis, processing and/or stability of 23S rRNA; Belongs to the DUF177 domain family.
      
 0.833
ydhF
Putative aldo/keto reductase; Similar to E. coli orf, hypothetical protein (AAC74719.1); Blastp hit to AAC74719.1 (298 aa), 89% identity in aa 1 - 298.
      
 0.742
yjeH
Putative transporter; Cytoplasmic membrane protein; similar to E. coli putative transport (AAC77101.1); Blastp hit to AAC77101.1 (418 aa), 71% identity in aa 1 - 410.
    
 
 0.707
yhbU
Similar to E. coli putative collagenase (AAC76192.1); Blastp hit to AAC76192.1 (331 aa), 96% identity in aa 1 - 331.
      
 0.697
STM4267
Putative glutathione S-transferase; Belongs to the GST superfamily.
  
  
 0.652
creD
Similar to E. coli tolerance to colicin E2 (AAC77353.1); Blastp hit to AAC77353.1 (450 aa), 73% identity in aa 1 - 450.
   
  
 0.613
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.608
ydjM
LexA regulated gene; Putative SOS response; similar to E. coli orf, hypothetical protein (AAC74798.1); Blastp hit to AAC74798.1 (200 aa), 86% identity in aa 1 - 199.
      
 0.580
yhiI
Similar to E. coli putative membrane protein (AAC76512.1); Blastp hit to AAC76512.1 (355 aa), 87% identity in aa 1 - 355.
      
 0.580
ybjC
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73937.1); Blastp hit to AAC73937.1 (95 aa), 59% identity in aa 1 - 95.
      
 0.575
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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