STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqiKSimilar to E. coli putative membrane protein (AAC76087.1); Blastp hit to AAC76087.1 (553 aa), 92% identity in aa 1 - 553. (559 aa)    
Predicted Functional Partners:
STM3198
Putative inner membrane protein; Similar to E. coli putative oxidoreductase (AAC76086.1); Blastp hit to AAC76086.1 (209 aa), 72% identity in aa 1 - 201.
 
  
 0.966
sseA-2
Similar to E. coli putative thiosulfate sulfurtransferase (AAC75574.1); Blastp hit to AAC75574.1 (334 aa), 80% identity in aa 54 - 332.
      
 0.890
rsxC
Putative respiratory-chain NADH dehydrogenase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
      
 0.833
ygfA
Similar to E. coli putative ligase (AAC75949.1); Blastp hit to AAC75949.1 (182 aa), 86% identity in aa 1 - 182; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
      
 0.762
yjfJ
Putative phage shock protein A; IM30; suppresses sigma54-dependent transcription; similar to E. coli putative alpha helical protein (AAC77139.1); Blastp hit to AAC77139.1 (232 aa), 88% identity in aa 1 - 232.
 
  
 0.752
ybbJ
Putative membrane protein implicated in regulation of membrane protease activity; Similar to E. coli orf, hypothetical protein (AAC73590.1); Blastp hit to AAC73590.1 (151 aa), 85% identity in aa 3 - 149.
  
  
 0.684
hflC
Component of modulator for protease specific for FtsH phage lambda cII repressor; HflC and HflK could regulate a protease.
     
 0.664
cycA
APC family D-alanine/D-serine/glycine transport protein; Similar to E. coli transport of D-alanine, D-serine, and glycine (AAC77165.1); Blastp hit to AAC77165.1 (470 aa), 95% identity in aa 1 - 469.
   
  
 0.578
hflK
Component of modulator for protease specific for FtsH phage lambda cII repressor; HflC and HflK could encode or regulate a protease.
     
 0.575
yebB
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74932.1); Blastp hit to AAC74932.1 (233 aa), 80% identity in aa 37 - 228.
  
     0.509
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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