STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygjPPutative metal-dependent hydrolase; Similar to E. coli orf, hypothetical protein (AAC76120.1); Blastp hit to AAC76120.1 (179 aa), 88% identity in aa 13 - 174. (165 aa)    
Predicted Functional Partners:
ygjO
Putative methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
 
     0.670
yehS
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC75185.1); Blastp hit to AAC75185.1 (156 aa), 90% identity in aa 1 - 155.
 
    0.569
ybiN
Putative SAM-dependent methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.533
STM1628
Putative cytoplasmic protein; Similar to E. coli putative alpha helix chain (AAC73460.1); Blastp hit to AAC73460.1 (98 aa), 52% identity in aa 8 - 98.
 
     0.531
yaeQ
Putative cytoplasmic protein; Hypothetical 20.8 Kda protein in mesJ-cutF intergenic region. (SW:YAEQ_SALTY).
 
    0.510
yaiE
Putative cytoplasmic protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.510
ygjQ
Putative integral membrane protein; Similar to E. coli orf, hypothetical protein (AAC76121.1); Blastp hit to AAC76121.1 (230 aa), 73% identity in aa 1 - 230.
  
    0.491
yohL
Putative cytoplasmic protein; Repressor of rcnA expression. Acts by binding specifically to the rcnA promoter in the absence of nickel and cobalt. In the presence of one of these metals, it has a weaker affinity for rcnA promoter (By similarity); Belongs to the FrmR/RcnR family.
 
     0.476
ygjR
Putative dehydrogenase; Similar to E. coli orf, hypothetical protein (AAC76122.1); Blastp hit to AAC76122.1 (334 aa), 83% identity in aa 7 - 332.
       0.445
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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