STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygjQPutative integral membrane protein; Similar to E. coli orf, hypothetical protein (AAC76121.1); Blastp hit to AAC76121.1 (230 aa), 73% identity in aa 1 - 230. (230 aa)    
Predicted Functional Partners:
ydcF
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC74496.1); Blastp hit to AAC74496.1 (266 aa), 68% identity in aa 1 - 266.
      
 0.897
ydgM
Putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Required to maintain the reduced state of SoxR; Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
  
 0.773
yhfK
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76383.1); Blastp hit to AAC76383.1 (696 aa), 86% identity in aa 1 - 695.
      
 0.726
STM3820
Similar to E. coli putative cytochrome C peroxidase (AAC76543.1); Blastp hit to AAC76543.1 (465 aa), 82% identity in aa 2 - 463.
      
 0.722
ygjR
Putative dehydrogenase; Similar to E. coli orf, hypothetical protein (AAC76122.1); Blastp hit to AAC76122.1 (334 aa), 83% identity in aa 7 - 332.
       0.572
STM4013
Putative membrane-associated metal-dependent hydrolase.
  
     0.542
ygjP
Putative metal-dependent hydrolase; Similar to E. coli orf, hypothetical protein (AAC76120.1); Blastp hit to AAC76120.1 (179 aa), 88% identity in aa 13 - 174.
  
    0.495
STM4015
Putative cytoplasmic protein.
  
    0.488
STM4014
Putative periplasmic protein.
  
    0.482
STM4011
Putative inner membrane protein.
  
    0.480
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.