STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrbFPutative ABC superfamily transport protein; Atp_bind; similar to E. coli putative ATP-binding component of a transport system (AAC76227.1); Blastp hit to AAC76227.1 (269 aa), 94% identity in aa 1 - 266. (270 aa)    
Predicted Functional Partners:
yrbB
Putative STAS domain protein; Similar to E. coli orf, hypothetical protein (AAC76223.1); Blastp hit to AAC76223.1 (129 aa), 69% identity in aa 33 - 129.
  
 0.999
yrbD
Putative ABC superfamily transport protein; Bind_prot; similar to E. coli orf, hypothetical protein (AAC76225.1); Blastp hit to AAC76225.1 (183 aa), 87% identity in aa 1 - 183.
 
 0.999
yrbE
Putative ABC superfamily transport protein; Membr; similar to E. coli orf, hypothetical protein (AAC76226.1); Blastp hit to AAC76226.1 (260 aa), 96% identity in aa 1 - 260.
 0.999
yrbC
Putative ABC superfamily transport protein; Atp&memb; similar to E. coli orf, hypothetical protein (AAC76224.1); Blastp hit to AAC76224.1 (211 aa), 93% identity in aa 1 - 211.
 
 
 0.994
sapD
ABC superfamily peptide transport protein; Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides. Belongs to the ABC transporter superfamily.
 
    
0.906
oppD
Oligopeptide transport protein; Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily.
 
     
0.899
dppD
Dipeptide transport protein; ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of dipeptide transport system (AAC76566.1); Blastp hit to AAC76566.1 (327 aa), 95% identity in aa 1 - 327; Belongs to the ABC transporter superfamily.
 
     
0.899
STM1258
Putative ATPase component of ABC-type transport system; Contains duplicated ATPase domain; putative ATPase (gi|2337945).
     0.888
yrbA
Putative BolA family transcriptional regulator; Similar to E. coli orf, hypothetical protein (AAC76222.1); Blastp hit to AAC76222.1 (89 aa), 95% identity in aa 3 - 89; Belongs to the BolA/IbaG family.
  
  
 0.851
vacJ
Similar to E. coli lipoprotein precursor (AAC75406.1); Blastp hit to AAC75406.1 (251 aa), 94% identity in aa 1 - 251.
 
  
 0.810
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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