STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM3350Putative inner membrane protein. (243 aa)    
Predicted Functional Partners:
oadA
Putative sodium ion pump; oxaloacetate decarboxylase alpha chain. (SW:DCOA_SALTY).
     
 0.774
STM0052
Putative transcription regulator sensor for citrate; Similar to E. coli sequence similarity to Shigella regulator (AAC73721.1); Blastp hit to AAC73721.1 (226 aa), 47% identity in aa 5 - 223.
     
 0.742
oadB
Oxaloacetate decarboxylase beta chain; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
       0.728
oadG
Oxaloacetate decarboxylase gamma chain; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.
       0.723
citD2
Putative citrate lyase acyl carrier protein, gamma chain; Covalent carrier of the coenzyme of citrate lyase.
  
  
 0.560
citD
Citrate lyase acyl carrier protein (gamma chain); Covalent carrier of the coenzyme of citrate lyase.
  
  
 0.560
phnX
2-aminoethylphosphonate transport; Involved in phosphonate degradation.
      
 0.495
STM3355
Similar to E. coli L-tartrate dehydratase, subunit A (AAC76097.1); Blastp hit to AAC76097.1 (303 aa), 54% identity in aa 6 - 299.
  
    0.470
STM3356
Putative cation transporter; Similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 38% identity in aa 9 - 199, 34% identity in aa 441 - 610, 23% identity in aa 35 - 196, 22% identity in aa 425 - 594.
  
    0.470
STM3354
Similar to E. coli L-tartrate dehydratase, subunit B (AAC76098.1); Blastp hit to AAC76098.1 (201 aa), 69% identity in aa 2 - 201.
  
    0.464
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.