Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM3356Putative cation transporter; Similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 38% identity in aa 9 - 199, 34% identity in aa 441 - 610, 23% identity in aa 35 - 196, 22% identity in aa 425 - 594. (422 aa)    
Predicted Functional Partners:
STM3357
Putative gntR family regulatory protein; Similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 23% identity in aa 15 - 214.
 
  
 0.975
STM3355
Similar to E. coli L-tartrate dehydratase, subunit A (AAC76097.1); Blastp hit to AAC76097.1 (303 aa), 54% identity in aa 6 - 299.
 
  
 0.898
STM0286
Putative cytoplasmic protein.
      
 0.897
STM3354
Similar to E. coli L-tartrate dehydratase, subunit B (AAC76098.1); Blastp hit to AAC76098.1 (201 aa), 69% identity in aa 2 - 201.
 
  
 0.857
STM4308
Putative component of anaerobic dehydrogenases; Similar to E. coli putative oxidoreductase component (AAC74663.1); Blastp hit to AAC74663.1 (207 aa), 33% identity in aa 14 - 206.
   
  
 0.686
STM0551
Putative diguanylate cyclase/phosphodiesterase domain 0.
      
 0.678
STM1259
Putative ATPase component of ABC-type transport system; Contains duplicated ATPase domain; putative ATPase (gi|2337946).
      
 0.650
cvpA
Similar to E. coli membrane protein required for colicin V production (AAC75373.1); Blastp hit to AAC75373.1 (162 aa), 96% identity in aa 1 - 161.
      
 0.650
STM2749
Putative cytoplasmic protein; Similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 65% identity in aa 7 - 69.
      
 0.642
STM0770
Putative ABC transport protein; Similar to E. coli ferric enterobactin (enterochelin) transport (AAC73691.1); Blastp hit to AAC73691.1 (334 aa), 37% identity in aa 9 - 332; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.558
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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