Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
yhiRPutative cytoplasmic protein; Specifically methylates the adenine in position 2030 of 23S rRNA. (280 aa)    
Predicted Functional Partners:
ybiN
Putative SAM-dependent methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA.
      
 0.922
yfiC
Putative transferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
   
  
 0.856
ybeD
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73732.1); Blastp hit to AAC73732.1 (87 aa), 97% identity in aa 1 - 87; Belongs to the UPF0250 family.
      
 0.822
fxsA
Suppresses F exclusion of bacteriophage T7; Similar to E. coli orf, hypothetical protein (AAC77100.1); Blastp hit to AAC77100.1 (125 aa), 92% identity in aa 1 - 125.
      
 0.680
gor
Similar to E. coli glutathione oxidoreductase (AAC76525.1); Blastp hit to AAC76525.1 (450 aa), 94% identity in aa 1 - 450.
  
    0.636
yhbY
Putative RNA-binding protein; Contains KH domain; similar to E. coli orf, hypothetical protein (AAC76212.1); Blastp hit to AAC76212.1 (97 aa), 95% identity in aa 1 - 97.
      
 0.612
yaiZ
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC73483.1); Blastp hit to AAC73483.1 (114 aa), 84% identity in aa 45 - 114.
      
 0.547
yhiQ
Putative SAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA.
  
  
 0.533
STM3595
Putative phosphatase.
       0.503
ybeA
Putative cytoplasmic protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
   
  
 0.475
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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