STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM3605Putative phage endolysin. (118 aa)    
Predicted Functional Partners:
STM4271
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC75202.1); Blastp hit to AAC75202.1 (132 aa), 33% identity in aa 13 - 113.
      
 0.859
STM1028
Gifsy-2 prophage lysozyme; Similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 40% identity in aa 35 - 161.
      
 0.854
STM2715
Fels-2 prophage protein; Probable prophage lysozyme; similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 36% identity in aa 35 - 163.
      
 0.854
yajD
Putative cytoplasmic protein; Hypothetical 12.6 Kda protein in secF-tsx intergenic region. (SW:YAJD_SALTY); Belongs to the HNH nuclease family.
     
 0.852
nlpC
Lipoprotein; Similar to E. coli lipoprotein (AAC74778.1); Blastp hit to AAC74778.1 (154 aa), 86% identity in aa 1 - 154.
     
 0.851
yohJ
Putative effector of murein hydrolase LrgA; Similar to E. coli orf, hypothetical protein (AAC75202.1); Blastp hit to AAC75202.1 (132 aa), 91% identity in aa 1 - 132.
      
 0.815
ycjI
Similar to E. coli putative carboxypeptidase (AAC74408.1); Blastp hit to AAC74408.1 (262 aa), 90% identity in aa 21 - 262.
      
 0.769
yciI
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74333.1); Blastp hit to AAC74333.1 (130 aa), 91% identity in aa 33 - 130.
      
 0.769
orf48
Amino acid permease YeeF like protein (gi|1526981).
      
 0.753
vacJ
Similar to E. coli lipoprotein precursor (AAC75406.1); Blastp hit to AAC75406.1 (251 aa), 94% identity in aa 1 - 251.
      
 0.721
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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