STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yibPSimilar to E. coli putative membrane protein (AAC76637.1); Blastp hit to AAC76637.1 (427 aa), 91% identity in aa 1 - 427. (427 aa)    
Predicted Functional Partners:
ftsX
Putative integral membrane cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.989
ftsE
Putative ATPase involved in cell division; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.950
yigQ
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76638.1); Blastp hit to AAC76638.1 (277 aa), 81% identity in aa 1 - 276.
    0.950
amiB
N-acetylmuramoyl-l-alanine amidase II; Cell-wall hydrolase involved in septum cleavage during cell division.
 
 
 0.903
amiC
Similar to E. coli putative amidase (AAC75856.1); Blastp hit to AAC75856.1 (447 aa), 94% identity in aa 31 - 446.
 
 
 0.868
yhgE
Putative inner membrane protein; Similar to E. coli putative transport (AAC76427.1); Blastp hit to AAC76427.1 (574 aa), 56% identity in aa 1 - 574.
      
 0.858
pmgI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.824
cedA
Cell division modulator; Activates the cell division inhibited by chromosomal DNA over-replication.
      
 0.813
amiA
N-acetylmuramoyl-l-alanine amidase I; Cell-wall hydrolase involved in septum cleavage during cell division; Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
 
   0.785
yjbQ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77026.1); Blastp hit to AAC77026.1 (138 aa), 78% identity in aa 1 - 138; Belongs to the UPF0047 family.
      
 0.769
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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