Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rarDChloramphenicol resistance; Similar to E. coli orf, hypothetical protein (AAC76822.1); Blastp hit to AAC76822.1 (300 aa), 83% identity in aa 8 - 297. (294 aa)    
Predicted Functional Partners:
ybgL
Putative lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
     
 0.901
yigI
Putative PaaI protein; Possibly involved in aromatic compounds catabolism; hypothetical protein in rarD-pldA intergenic region. (SW:YIGI_SALTY).
  
    0.765
yigF
Putative inner membrane protein; Hypothetical 14.6 Kda protein in corA-rarD intergenic region. (SW:YIGF_SALTY).
   
 
 0.734
yigG
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76821.1); Blastp hit to AAC76821.1 (138 aa), 57% identity in aa 7 - 136.
     
 0.731
yaaA
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73117.1); Blastp hit to AAC73117.1 (258 aa), 86% identity in aa 1 - 257; Belongs to the UPF0246 family.
      
 0.714
pagO
Predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY).
     
 0.617
fsr
Putative MFS family of transport protein; Similar to E. coli fosmidomycin resistance protein (AAC73581.1); Blastp hit to AAC73581.1 (406 aa), 93% identity in aa 1 - 405.
   
  
 0.544
bglA
Similar to E. coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); Blastp hit to AAC75939.1 (479 aa), 95% identity in aa 3 - 479; Belongs to the glycosyl hydrolase 1 family.
      
 0.540
yegB
Similar to E. coli putative transport protein (AAC75138.1); Blastp hit to AAC75138.1 (471 aa), 85% identity in aa 1 - 469.
      
 0.494
yidY
Putative MFS family tranport protein; 1st mdule; similar to E. coli putative transport protein (AAC76733.1); Blastp hit to AAC76733.1 (391 aa), 77% identity in aa 1 - 391.
   
  
 0.494
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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