STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yigMPutative transport protein; Uptake of biotin; Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (DME) (TC 2.A.7.3) family. (299 aa)    
Predicted Functional Partners:
yigL
Putative hydrolase of the HAD superfamily; Similar to E. coli orf, hypothetical protein (AAC76829.1); Blastp hit to AAC76829.1 (171 aa), 85% identity in aa 1 - 167.
 
  
 0.954
pldB
Similar to E. coli lysophospholipase L(2) (AAC76828.1); Blastp hit to AAC76828.1 (340 aa), 81% identity in aa 1 - 336.
 
  
 0.946
ygiM
Putative SH3 domain protein; Similar to E. coli orf, hypothetical protein (AAC76091.1); Blastp hit to AAC76091.1 (206 aa), 91% identity in aa 1 - 206.
  
   
 0.875
panF
Similar to E. coli sodium/pantothenate symporter (AAC76290.1); Blastp hit to AAC76290.1 (485 aa), 93% identity in aa 3 - 485; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.837
yjgM
Putative acetyltransferase; Hypothetical 18.3 Kda protein in miaE 3'region (ORF 18.3). (SW:YJGM_SALTY); Belongs to the acetyltransferase family.
      
 0.698
brnQ
LIVCS family, branched chain amino acid transporter system II (LIV-II); Component of the LIV-II transport system for branched-chain amino acids. This LIV-II transport system may be H(+)-coupled.
      
 0.616
ytfN
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77178.1); Blastp hit to AAC77178.1 (1259 aa), 86% identity in aa 1 - 1259.
  
     0.550
ybjE
Similar to E. coli putative surface protein (AAC73961.1); Blastp hit to AAC73961.1 (315 aa), 88% identity in aa 17 - 315.
  
     0.474
rthB
Homoserine/homoserine lactone efflux protein; Conducts the efflux of homoserine and homoserine lactone. Belongs to the Rht family.
  
    0.467
ccmB
ABC superfamily (membrane) heme exporter protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
      
 0.454
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.