STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM4041Putative inner membrane protein. (107 aa)    
Predicted Functional Partners:
STM4042
Putative branched-chain amino acid permease; Similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 25% identity in aa 8 - 160.
   
 0.984
STM4042A
Hypothetical protein.
 
   
 0.908
STM1575
Putative transcriptional regulator, TetR family.
  
    0.597
iroC
Putative ATP binding cassette (ABC) transporter; Similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 26% identity in aa 14 - 582, 29% identity in aa 34 - 565.
  
     0.578
STM0918
Putative Fels-1 prophage minor tail protein; Lambda phage H tail component homolog (gi|2232364).
  
     0.539
yhjD
Putative tRNA-processing ribonuclease; Similar to E. coli orf, hypothetical protein (AAC76547.1); Blastp hit to AAC76547.1 (337 aa), 85% identity in aa 1 - 336.
  
     0.535
STM3549
Putative inner membrane protein.
  
     0.525
ybdZ
Putative cytoplasmic protein.
  
     0.514
STM0869
Similar to E. coli putative DEOR-type transcriptional regulator (AAC73933.1); Blastp hit to AAC73933.1 (178 aa), 78% identity in aa 1 - 178.
  
     0.436
STM2594
Gifsy-1 prophage protein; Similar to phage tail component H; lambda phage H tail component homolog (gi|2232364).
  
     0.434
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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