STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM4192Putative cytoplasmic protein; Similar to E. coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1); Blastp hit to AAC73457.1 (218 aa), 86% identity in aa 40 - 218. (179 aa)    
Predicted Functional Partners:
ybbP
Putative inner membrane protein; Similar to E. coli putative oxidoreductase (AAC73598.1); Blastp hit to AAC73598.1 (804 aa), 88% identity in aa 1 - 804.
 
     0.733
yjbC
Putative pseudouridine synthase; Dual specificity enzyme that catalyzes the synthesis of pseudouridine from uracil-2604 in 23S ribosomal RNA and from uracil-35 in the anticodon of tRNA(Tyr); Belongs to the pseudouridine synthase RsuA family.
  
    0.713
STM4191
Putative cytoplasmic protein.
       0.682
yajD
Putative cytoplasmic protein; Hypothetical 12.6 Kda protein in secF-tsx intergenic region. (SW:YAJD_SALTY); Belongs to the HNH nuclease family.
  
     0.580
arnE
Putative inner membrane protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family.
  
     0.527
pepE
(alpha)-aspartyl dipeptidase; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids.
       0.498
yhhN
Putative inner membrane protein; Similar to E. coli putative enzyme (AAC76493.1); Blastp hit to AAC76493.1 (208 aa), 91% identity in aa 1 - 208.
  
     0.490
ygiB
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76073.1); Blastp hit to AAC76073.1 (234 aa), 96% identity in aa 12 - 234; Belongs to the UPF0441 family.
  
     0.475
STM2768
Putative transposase; Similar to E. coli orf, hypothetical protein (AAC75149.1); Blastp hit to AAC75149.1 (102 aa), 85% identity in aa 4 - 102.
  
     0.444
STM3021
Putative inner membrane protein.
  
     0.414
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.