Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM4207Putative phage baseplate component. (240 aa)    
Predicted Functional Partners:
STM4208
Putative cytoplasmic protein.
 
  
 0.989
STM4211
Putative phage tail protein.
 
  
 0.987
STM4202
Putative phage baseplate protein.
 
  
 0.959
STM4213
Putative phage tail sheath protein.
 
 
 0.951
STM4210
Putative methyl-accepting chemotaxis protein.
  
  
 0.943
STM4212
Putative phage tail core protein.
 
  
 0.933
STM4201
Putative phage tail protein.
 
  
 0.930
STM4200
Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 31% identity in aa 312 - 498, 33% identity in aa 426 - 547, 22% identity in aa 233 - 444, 30% identity in aa 132 - 266, 23-1073758628dentity in aa 170 - 398, 21% identity in aa 178 - 417, 24-1073758654dentity in aa 111 - 354, 23% identity in aa 950 - 1104, 20% identity in aa 1015 - 1106.
 
  
 0.891
STM2700
Fels-2 prophage protein; Similar to genes in P2-like phages; unknown (gi|2852349).
 
  
 0.854
STM4209
Putative inner membrane protein.
  
  
 0.851
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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