Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STM4312Putative phage protein. (89 aa)    
Predicted Functional Partners:
STM4313
Putative cytoplasmic protein.
  
  
 0.931
STM4316
Putative cytoplasmic protein.
  
  
 0.883
STM1329
Putative inner membrane protein.
   
  
 0.857
tnpA_6
Transposase for insertion sequence element IS200 (SW:T200_SALTY).
   
  
 0.855
STM4317
Putative copG family helix-turn-helix protein.
     
 0.783
STM4314
Putative luxR family bacterial regulatory proteins.
  
    0.733
STM4315
Putative AraC-type DNA-binding domain-containing protein; HilD (gi|4455108).
  
    0.729
STM3154
Putative ATP-dependent RNA helicase-like protein.
      
 0.703
sinR
Transcriptional regulator; Probable regulatory protein. Its target is not known.
   
  
 0.680
STM1600
Putative inner membrane protein.
      
 0.678
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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