STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjfKPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77140.1); Blastp hit to AAC77140.1 (219 aa), 80% identity in aa 1 - 219. (227 aa)    
Predicted Functional Partners:
yjfL
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77141.1); Blastp hit to AAC77141.1 (132 aa), 90% identity in aa 1 - 132.
  
    0.836
yjfJ
Putative phage shock protein A; IM30; suppresses sigma54-dependent transcription; similar to E. coli putative alpha helical protein (AAC77139.1); Blastp hit to AAC77139.1 (232 aa), 88% identity in aa 1 - 232.
  
    0.826
yjfI
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77138.1); Blastp hit to AAC77138.1 (133 aa), 64% identity in aa 1 - 132.
  
    0.823
STM4372
Resembles eukaryotic-type potassium channels.
  
    0.822
yjfC
Putative glutathionylspermidine synthase; Similar to E. coli putative synthetase/amidase (AAC77143.1); Blastp hit to AAC77143.1 (387 aa), 89% identity in aa 1 - 387.
  
    0.797
yjfM
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77142.1); Blastp hit to AAC77142.1 (212 aa), 69% identity in aa 1 - 212.
  
    0.796
aidB
Putative acyl-CoA dehydrogenase; Adaptive response; transcription activated by Ada; similar to E. coli putative acyl coenzyme A dehydrogenase (AAC77144.1); Blastp hit to AAC77144.1 (546 aa), 85% identity in aa 8 - 544.
       0.773
yjfH
Putative tRNA/rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. RlmB subfamily.
       0.501
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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