Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjfMPutative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77142.1); Blastp hit to AAC77142.1 (212 aa), 69% identity in aa 1 - 212. (212 aa)    
Predicted Functional Partners:
yjfC
Putative glutathionylspermidine synthase; Similar to E. coli putative synthetase/amidase (AAC77143.1); Blastp hit to AAC77143.1 (387 aa), 89% identity in aa 1 - 387.
  
  
 0.950
ygiC
Putative glutathionylspermidine synthase; Similar to E. coli putative synthetase/amidase (AAC76074.1); Blastp hit to AAC76074.1 (386 aa), 94% identity in aa 1 - 386.
  
  
 0.944
yjfL
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77141.1); Blastp hit to AAC77141.1 (132 aa), 90% identity in aa 1 - 132.
  
  
 0.865
STM1496
Similar to E. coli putative DMSO reductase anchor subunit (AAC74662.1); Blastp hit to AAC74662.1 (284 aa), 76% identity in aa 1 - 284.
      
 0.859
ylbA
Putative glyoxylate utilization; Similar to E. coli orf, hypothetical protein (AAC73617.1); Blastp hit to AAC73617.1 (261 aa), 92% identity in aa 1 - 261.
      
 0.855
gudT
Putative MFS superfamily D-glucarate permease; Similar to E. coli putative transport protein (AAC75831.1); Blastp hit to AAC75831.1 (450 aa), 96% identity in aa 1 - 450.
   
  
 0.855
yjfK
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77140.1); Blastp hit to AAC77140.1 (219 aa), 80% identity in aa 1 - 219.
  
    0.796
yjfJ
Putative phage shock protein A; IM30; suppresses sigma54-dependent transcription; similar to E. coli putative alpha helical protein (AAC77139.1); Blastp hit to AAC77139.1 (232 aa), 88% identity in aa 1 - 232.
  
    0.789
yjfI
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77138.1); Blastp hit to AAC77138.1 (133 aa), 64% identity in aa 1 - 132.
       0.787
STM4372
Resembles eukaryotic-type potassium channels.
  
    0.782
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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