STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjfYPutative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC77156.1); Blastp hit to AAC77156.1 (91 aa), 71% identity in aa 1 - 91. (91 aa)    
Predicted Functional Partners:
ybiJ
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73889.1); Blastp hit to AAC73889.1 (86 aa), 80% identity in aa 1 - 86.
   
  
 0.898
STM0565
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73406.1); Blastp hit to AAC73406.1 (83 aa), 53% identity in aa 6 - 83.
      
 0.897
ydgH
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74676.1); Blastp hit to AAC74676.1 (314 aa), 90% identity in aa 1 - 314.
      
 0.897
STM3362
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 53% identity in aa 18 - 104.
      
 0.897
yjfN
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77145.1); Blastp hit to AAC77145.1 (100 aa), 80% identity in aa 7 - 100.
      
 0.897
yjfO
Putative lipoprotein; Similar to E. coli orf, hypothetical protein (AAC77146.1); Blastp hit to AAC77146.1 (142 aa), 78% identity in aa 34 - 142.
      
 0.897
yhcN
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 79% identity in aa 18 - 104.
      
 0.896
STM0082
Putative secreted protein; Similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 36% identity in aa 18 - 103.
      
 0.854
yncC
Putative gntR family regulatory protein; Similar to E. coli orf, hypothetical protein (AAC74532.1); Blastp hit to AAC74532.1 (240 aa), 58% identity in aa 20 - 238.
      
 0.769
yahO
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73432.1); Blastp hit to AAC73432.1 (91 aa), 72% identity in aa 1 - 91.
      
 0.726
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.