Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytfJPutative transcriptional regulator; Similar to E. coli orf, hypothetical protein (AAC77173.1); Blastp hit to AAC77173.1 (184 aa), 85% identity in aa 1 - 183. (185 aa)    
Predicted Functional Partners:
STM3169
Similar to E. coli putative solute-binding transport protein (AAC76603.1); Blastp hit to AAC76603.1 (328 aa), 28% identity in aa 7 - 320.
   
  
 0.642
ytfK
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77174.1); Blastp hit to AAC77174.1 (81 aa), 90% identity in aa 1 - 81.
  
  
 0.557
yrbA
Putative BolA family transcriptional regulator; Similar to E. coli orf, hypothetical protein (AAC76222.1); Blastp hit to AAC76222.1 (89 aa), 95% identity in aa 3 - 89; Belongs to the BolA/IbaG family.
      
 0.546
yjiA
Putative cobalamin synthesis protein; Similar to E. coli orf, hypothetical protein (AAC77308.1); Blastp hit to AAC77308.1 (284 aa), 90% identity in aa 1 - 284.
   
  
 0.545
yliB
Putative ABC transporter periplasmic binding protein; Part of the ABC transporter complex GsiABCD involved in glutathione import. Binds glutathione.
      
 0.451
ynhG
Putative LysM domain protein; Similar to E. coli orf, hypothetical protein (AAC74748.1); Blastp hit to AAC74748.1 (334 aa), 85% identity in aa 1 - 334.
      
 0.450
yrbD
Putative ABC superfamily transport protein; Bind_prot; similar to E. coli orf, hypothetical protein (AAC76225.1); Blastp hit to AAC76225.1 (183 aa), 87% identity in aa 1 - 183.
      
 0.450
ygaU
Putative LysM domain protein; Similar to E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149.
   
  
 0.420
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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