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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cybCCytochrome b(562); Electron-transport protein of unknown function. (128 aa)    
Predicted Functional Partners:
pmbA
Putative peptide maturation protein; Maturation of antibiotic MccB17; see tld genes; similar to E. coli maturation of antibiotic MccB17, see tld genes (AAC77192.1); Blastp hit to AAC77192.1 (450 aa), 95% identity in aa 1 - 450.
      0.886
ybbV
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC73612.1); Blastp hit to AAC73612.1 (92 aa), 56% identity in aa 39 - 91.
      
 0.766
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
 
      0.721
ynfD
Putative outer membrane protein; Similar to E. coli orf, hypothetical protein (AAC74658.1); Blastp hit to AAC74658.1 (115 aa), 71% identity in aa 14 - 115.
      
 0.712
htgA
Functions on sigma 32 promoters permitting growth at high temperature; similar to E. coli putative oxidoreductase (AAC73122.1); Blastp hit to AAC73122.1 (237 aa), 87% identity in aa 1 - 236.
      
 0.711
ppdC
Prepilin peptidase dependent protein C; Putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein C (AAC75862.1); Blastp hit to AAC75862.1 (107 aa), 69% identity in aa 1 - 106.
      
 0.574
cybB
Similar to E. coli cytochrome b(561) (AAC74500.1); Blastp hit to AAC74500.1 (188 aa), 84% identity in aa 13 - 187.
   
  
 0.528
STM1158
Putative inner membrane protein; Similar to E. coli putative cytochrome (AAC74141.1); Blastp hit to AAC74141.1 (188 aa), 77% identity in aa 1 - 187.
   
  
 0.518
yjgA
Similar to E. coli putative alpha helix protein (AAC77191.1); Blastp hit to AAC77191.1 (183 aa), 95% identity in aa 1 - 183; Belongs to the UPF0307 family.
  
    0.487
STM1253
Putative inner membrane protein; Similar to E. coli putative cytochrome (AAC75040.1); Blastp hit to AAC75040.1 (186 aa), 67% identity in aa 11 - 183.
   
  
 0.478
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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