STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjiGPutative permease; Similar to E. coli orf, hypothetical protein (AAC77285.1); Blastp hit to AAC77285.1 (153 aa), 96% identity in aa 1 - 153. (153 aa)    
Predicted Functional Partners:
yjiH
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC77286.1); Blastp hit to AAC77286.1 (231 aa), 84% identity in aa 2 - 231.
 
  
 0.974
iadA
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.
 
    0.902
yjiE
Similar to E. coli putative transcriptional regulator LYSR-type (AAC77283.1); Blastp hit to AAC77283.1 (303 aa), 81% identity in aa 1 - 302; Belongs to the LysR transcriptional regulatory family.
 
    0.772
nrfD
Similar to E. coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1); Blastp hit to AAC77043.1 (318 aa), 85% identity in aa 1 - 318.
  
     0.665
nrfB
Formate-dependent nitrite reductase; A penta-haeme cytochrome c; similar to E. coli formate-dependent nitrite reductase; a penta-haeme cytochrome c (AAC77041.1); Blastp hit to AAC77041.1 (190 aa), 88% identity in aa 1 - 190.
  
     0.658
csgB
Minor curlin subunit precursor; Curlin is the structural subunit of the curli. Curli are coiled surface structures that assemble preferentially at growth temperatures below 37 degrees Celsius. Curli can bind to fibronectin. The minor subunit is the nucleation component of curlin monomers; Belongs to the CsgA/CsgB family.
  
     0.576
STM0926
Putative Fels-1 prophage minor tail protein; Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 50% identity in aa 3 - 515, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 34% identity in aa 354 - 568, 29-1073758628dentity in aa 116 - 346, 24% identity in aa 962 - 1111, 26-1073758654dentity in aa 940 - 1106, 27% identity in aa 420 - 581, 23% identity in aa 959 - 1113, 23% identity in aa 961 - 1079, 30% identity in aa 778 - 829, 22% identity in aa 778 - 850.
  
     0.566
STM1049
Gifsy-2 prophage probable tail fiber protein; Similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 549, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 32% identity in aa 354 - 568, 26-1073758628dentity in aa 961 - 1111, 24% identity in aa 959 - 1113, 27-1073758654dentity in aa 940 - 1106, 26% identity in aa 766 - 829, 36% identity in aa 822 - 851.
  
     0.560
STM2588
Gifsy-1 prophage protein; Similar to tail fiber-like protein; similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 515, 56% identity in aa 878 - 1084, 42% identity in aa 1008 - 1122, 33% identity in aa 354 - 568, 26-1073758628dentity in aa 116 - 345, 26% identity in aa 961 - 1111, 26-1073758654dentity in aa 940 - 1106, 25% identity in aa 766 - 828, 26% identity in aa 778 - 841.
  
     0.544
STM1669
Invasin-like protein; Homology to invasin C of Yersinia; similar to E. coli putative factor (AAC74304.1); Blastp hit to AAC74304.1 (417 aa), 30% identity in aa 38 - 403.
     
 0.468
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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