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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjiXPutative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77309.1); Blastp hit to AAC77309.1 (67 aa), 94% identity in aa 1 - 67. (67 aa)    
Predicted Functional Partners:
yjiA
Putative cobalamin synthesis protein; Similar to E. coli orf, hypothetical protein (AAC77308.1); Blastp hit to AAC77308.1 (284 aa), 90% identity in aa 1 - 284.
  
 0.976
yjiY
Similar to E. coli putative carbon starvation protein (AAC77310.1); Blastp hit to AAC77310.1 (721 aa), 96% identity in aa 6 - 721.
  
 0.962
cstA
Similar to E. coli carbon starvation protein (AAC73699.1); Blastp hit to AAC73699.1 (701 aa), 97% identity in aa 1 - 701.
  
 0.906
yhjG
Putative inner membrane protein; Similar to E. coli orf, hypothetical protein (AAC76549.1); Blastp hit to AAC76549.1 (691 aa), 93% identity in aa 6 - 691.
  
     0.520
ybiP
Putative integral membrane protein; Similar to E. coli putative enzyme (AAC73902.1); Blastp hit to AAC73902.1 (527 aa), 84% identity in aa 1 - 526.
  
     0.468
yeiR
Putative cobalamin synthesis protein; Similar to E. coli orf, hypothetical protein (AAC75234.1); Blastp hit to AAC75234.1 (328 aa), 87% identity in aa 1 - 328.
  
  
 0.446
lpxO
Putative dioxygenase for synthesis of lipid; Putative dioxygenase; LpxO (gi|9454389).
  
     0.418
stdC
Putative fimbrial chaparone protein; Similar to E. coli putative chaperone (AAC73811.1); Blastp hit to AAC73811.1 (242 aa), 40% identity in aa 20 - 230.
  
     0.408
sthB
Similar to E. coli putative outer membrane protein, export function (AAC73634.1); Blastp hit to AAC73634.1 (867 aa), 38% identity in aa 35 - 862.
  
     0.403
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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