STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjjUPutative phosphoesterase; Similar to E. coli orf, hypothetical protein (AAC77330.1); Blastp hit to AAC77330.1 (357 aa), 85% identity in aa 1 - 357. (357 aa)    
Predicted Functional Partners:
ytjA
Putative inner membrane protein.
  
  
 0.923
yjbR
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77027.1); Blastp hit to AAC77027.1 (118 aa), 92% identity in aa 1 - 117.
      
 0.899
ybeK
Putative purine nucleoside hydrolase; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively.
      
 0.898
yjbQ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77026.1); Blastp hit to AAC77026.1 (138 aa), 78% identity in aa 1 - 138; Belongs to the UPF0047 family.
     
 0.894
yjjV
Putative hydrolase; Similar to E. coli orf, hypothetical protein (AAC77331.1); Blastp hit to AAC77331.1 (211 aa), 76% identity in aa 1 - 210.
  
    0.894
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
      
 0.892
osmY
RpoS-dependent stationary phase gene; similar to E. coli hyperosmotically inducible periplasmic protein (AAC77329.1); Blastp hit to AAC77329.1 (201 aa), 89% identity in aa 1 - 201.
 
    0.817
ynfB
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74655.1); Blastp hit to AAC74655.1 (113 aa), 81% identity in aa 1 - 113; Belongs to the UPF0482 family.
      
 0.765
pepE
(alpha)-aspartyl dipeptidase; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids.
      
 0.716
iroN
TonB-dependent siderophore receptor protein; Similar to E. coli outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D (AAC73685.1); Blastp hit to AAC73685.1 (746 aa), 52% identity in aa 3 - 728, 44% identity in aa 245 - 746.
      
 0.700
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.