Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjjUPutative phosphoesterase; Similar to E. coli orf, hypothetical protein (AAC77330.1); Blastp hit to AAC77330.1 (357 aa), 85% identity in aa 1 - 357. (357 aa)    
Predicted Functional Partners:
ytjA
Putative inner membrane protein.
  
  
 0.938
ychK
Putative phosphoesterase; Similar to E. coli orf, hypothetical protein (AAC74316.1); Blastp hit to AAC74316.1 (314 aa), 83% identity in aa 14 - 314.
  
  
 0.918
yjjV
Putative hydrolase; Similar to E. coli orf, hypothetical protein (AAC77331.1); Blastp hit to AAC77331.1 (211 aa), 76% identity in aa 1 - 210.
  
    0.909
yjbR
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77027.1); Blastp hit to AAC77027.1 (118 aa), 92% identity in aa 1 - 117.
      
 0.896
ybeK
Putative purine nucleoside hydrolase; Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively.
      
 0.895
yjbQ
Putative cytoplasmic protein; Similar to E. coli orf, hypothetical protein (AAC77026.1); Blastp hit to AAC77026.1 (138 aa), 78% identity in aa 1 - 138; Belongs to the UPF0047 family.
  
  
 0.857
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
      
 0.852
osmY
RpoS-dependent stationary phase gene; similar to E. coli hyperosmotically inducible periplasmic protein (AAC77329.1); Blastp hit to AAC77329.1 (201 aa), 89% identity in aa 1 - 201.
 
    0.818
ynfB
Putative periplasmic protein; Similar to E. coli orf, hypothetical protein (AAC74655.1); Blastp hit to AAC74655.1 (113 aa), 81% identity in aa 1 - 113; Belongs to the UPF0482 family.
      
 0.723
pepE
(alpha)-aspartyl dipeptidase; Hydrolyzes dipeptides containing N-terminal aspartate residues. May play a role in allowing the cell to use peptide aspartate to spare carbon otherwise required for the synthesis of the aspartate family of amino acids.
      
 0.677
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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