STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STM4571Putative outer membrane protein. (190 aa)    
Predicted Functional Partners:
stjB
Similar to E. coli putative outer membrane protein (AAC76248.1); Blastp hit to AAC76248.1 (793 aa), 40% identity in aa 29 - 793.
 
    0.955
stjC
Putative fimbrial chaparone protein; Similar to E. coli putative chaperone (AAC76247.1); Blastp hit to AAC76247.1 (224 aa), 49% identity in aa 1 - 223.
 
    0.946
STM4574
Putative outer membrane protein; Similar to E. coli putative transcriptional regulator (AAC76251.1); Blastp hit to AAC76251.1 (238 aa), 32% identity in aa 1 - 238.
  
    0.722
sspB
Similar to E. coli stringent starvation protein B (AAC76260.1); Blastp hit to AAC76260.1 (165 aa), 89% identity in aa 1 - 165.
 
      0.675
STM4575
Putative outer membrane protein; Similar to E. coli putative transcriptional regulator (AAC76251.1); Blastp hit to AAC76251.1 (238 aa), 31% identity in aa 5 - 238.
  
    0.654
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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