STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN99054.1pts36C protein. (519 aa)    
Predicted Functional Partners:
KRN99052.1
Galactitol PTS, EIIA.
 
 
 0.994
KRN99053.1
Galactitol PTS, EIIB.
 
 
 0.991
KRO00833.1
Hypothetical protein.
 
 
 0.990
KRO00831.1
Hypothetical protein.
 
 
 0.985
KRO00071.1
PTS system iia component.
 
 
 0.982
KRO00072.1
PTS system galacitol-specific transporter subunit IIB.
 
 
 0.951
KRN99086.1
Phosphocarrier protein HPr.
    
 0.917
KRN99055.1
Hypothetical protein.
 
  
 0.882
gatA
Aspartyl glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
   
    0.767
KRN96545.1
1-phosphofructokinase (fructose-1-phosphate kinase); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.653
Your Current Organism:
Lactobacillus kimchiensis
NCBI taxonomy Id: 993692
Other names: DSM 24716, JCM 17702, KACC 15533, L. kimchiensis, Lactobacillus kimchiensis Kim et al. 2013, Lactobacillus sp. L133, strain L133
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