STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN99393.1Amino acid transporter. (472 aa)    
Predicted Functional Partners:
KRO00817.1
Alpha amylase catalytic region.
   
 0.781
KRO00818.1
Oligo-1,6-glucosidase.
   
 0.781
KRO00838.1
Alpha-glucosidase.
   
 0.781
KRO00839.1
Oligo-1,6-glucosidase (oligosaccharide alpha-1,6-glucosidase).
   
 0.781
KRN98119.1
Trehalose-6-phosphate hydrolase.
   
 0.781
KRN97362.1
Alpha-glucosidase.
   
 0.781
KRN99898.1
Trehalose-6-phosphate phosphoglucohydrolase (phosphotrehalase).
   
 0.781
KRN99291.1
Ribonucleases G and E.
    
 0.584
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
   0.551
KRN98648.1
Bifunctional acetaldehyde-CoA alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.484
Your Current Organism:
Lactobacillus kimchiensis
NCBI taxonomy Id: 993692
Other names: DSM 24716, JCM 17702, KACC 15533, L. kimchiensis, Lactobacillus kimchiensis Kim et al. 2013, Lactobacillus sp. L133, strain L133
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.