W5NSV1_SHEEP protein (Ovis aries) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

W5NSV1_SHEEP

Ribosomal_L18_c domain-containing protein. (245 aa)

Predicted Functional Partners:

FAU

0.926

RPL11

0.917

RPL8

0.904

RPL29

0.898

RPL28

0.896

RPL32

0.891

RPL18A

0.885

RPL22

0.867

RPS3

0.864

RPS5

0.863

Your Current Organism:

Ovis aries

NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAU	RPL11	ENSOARP00000013592	ENSOARP00000007831	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
FAU	RPL18A	ENSOARP00000013592	ENSOARP00000015513	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
FAU	RPL22	ENSOARP00000013592	ENSOARP00000013971	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.996
FAU	RPL28	ENSOARP00000013592	ENSOARP00000001488	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L28.	0.999
FAU	RPL29	ENSOARP00000013592	ENSOARP00000006908	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
FAU	RPL32	ENSOARP00000013592	ENSOARP00000016036	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L32.	0.999
FAU	RPL8	ENSOARP00000013592	ENSOARP00000013548	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L8.	0.998
FAU	RPS3	ENSOARP00000013592	ENSOARP00000012352	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
FAU	RPS5	ENSOARP00000013592	ENSOARP00000004113	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
FAU	W5NSV1_SHEEP	ENSOARP00000013592	ENSOARP00000001241	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_L18_c domain-containing protein.	0.926
RPL11	FAU	ENSOARP00000007831	ENSOARP00000013592	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
RPL11	RPL18A	ENSOARP00000007831	ENSOARP00000015513	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
RPL11	RPL22	ENSOARP00000007831	ENSOARP00000013971	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
RPL11	RPL28	ENSOARP00000007831	ENSOARP00000001488	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L28.	0.999
RPL11	RPL29	ENSOARP00000007831	ENSOARP00000006908	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
RPL11	RPL32	ENSOARP00000007831	ENSOARP00000016036	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L32.	0.999
RPL11	RPL8	ENSOARP00000007831	ENSOARP00000013548	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L8.	0.999
RPL11	RPS3	ENSOARP00000007831	ENSOARP00000012352	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
RPL11	RPS5	ENSOARP00000007831	ENSOARP00000004113	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
RPL11	W5NSV1_SHEEP	ENSOARP00000007831	ENSOARP00000001241	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	Ribosomal_L18_c domain-containing protein.	0.917