STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF1DTATA-box binding protein associated factor, RNA polymerase I subunit D. (276 aa)    
Predicted Functional Partners:
TAF1C
TATA-box binding protein associated factor, RNA polymerase I subunit C.
    
 0.984
TAF1A
TATA-box binding protein associated factor, RNA polymerase I subunit A.
    
 0.974
RNMT
mRNA cap guanine-N7 methyltransferase.
      
 0.944
TBP
Uncharacterized protein.
    
 0.903
TAF2
TATA-box binding protein associated factor 2.
      
 0.885
W5Q330_SHEEP
Uncharacterized protein.
    
 0.860
TTF1
Transcription termination factor 1.
     
 0.779
GCNA
SprT-like domain-containing protein.
    
 0.761
NAALADL1
N-acetylated alpha-linked acidic dipeptidase like 1.
      
 0.743
POLI
DNA polymerase iota.
      
 0.738
Your Current Organism:
Ovis aries
NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep
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