ABCB1 protein (Ovis aries) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCB1

Uncharacterized protein. (107 aa)

Predicted Functional Partners:

ABCC1

0.869

ABCG2

0.863

ABCC2

0.788

ABCC5

0.762

ABCB7

0.600

ABCG1

0.561

ABCA1

0.552

ABCA3

0.541

ABCB1-2

0.527

ABCC6

0.489

Your Current Organism:

Ovis aries

NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA1	ABCB1	ENSOARP00000007886	ENSOARP00000002542	ATP binding cassette subfamily A member 1.	Uncharacterized protein.	0.552
ABCA1	ABCB1-2	ENSOARP00000007886	ENSOARP00000002595	ATP binding cassette subfamily A member 1.	ABC transmembrane type-1 domain-containing protein.	0.571
ABCA1	ABCC5	ENSOARP00000007886	ENSOARP00000022173	ATP binding cassette subfamily A member 1.	ATP binding cassette subfamily C member 5.	0.592
ABCA1	ABCC6	ENSOARP00000007886	ENSOARP00000010642	ATP binding cassette subfamily A member 1.	ATP binding cassette subfamily C member 6.	0.413
ABCA1	ABCG1	ENSOARP00000007886	ENSOARP00000011406	ATP binding cassette subfamily A member 1.	ATP binding cassette subfamily G member 1.	0.541
ABCA3	ABCB1	ENSOARP00000019434	ENSOARP00000002542	ATP binding cassette subfamily A member 3.	Uncharacterized protein.	0.541
ABCA3	ABCB1-2	ENSOARP00000019434	ENSOARP00000002595	ATP binding cassette subfamily A member 3.	ABC transmembrane type-1 domain-containing protein.	0.468
ABCA3	ABCC5	ENSOARP00000019434	ENSOARP00000022173	ATP binding cassette subfamily A member 3.	ATP binding cassette subfamily C member 5.	0.422
ABCB1	ABCA1	ENSOARP00000002542	ENSOARP00000007886	Uncharacterized protein.	ATP binding cassette subfamily A member 1.	0.552
ABCB1	ABCA3	ENSOARP00000002542	ENSOARP00000019434	Uncharacterized protein.	ATP binding cassette subfamily A member 3.	0.541
ABCB1	ABCB1-2	ENSOARP00000002542	ENSOARP00000002595	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.527
ABCB1	ABCB7	ENSOARP00000002542	ENSOARP00000019506	Uncharacterized protein.	ATP binding cassette subfamily B member 7.	0.600
ABCB1	ABCC1	ENSOARP00000002542	ENSOARP00000010234	Uncharacterized protein.	ATP binding cassette subfamily C member 1.	0.869
ABCB1	ABCC2	ENSOARP00000002542	ENSOARP00000013942	Uncharacterized protein.	ATP binding cassette subfamily C member 2.	0.788
ABCB1	ABCC5	ENSOARP00000002542	ENSOARP00000022173	Uncharacterized protein.	ATP binding cassette subfamily C member 5.	0.762
ABCB1	ABCC6	ENSOARP00000002542	ENSOARP00000010642	Uncharacterized protein.	ATP binding cassette subfamily C member 6.	0.489
ABCB1	ABCG1	ENSOARP00000002542	ENSOARP00000011406	Uncharacterized protein.	ATP binding cassette subfamily G member 1.	0.561
ABCB1	ABCG2	ENSOARP00000002542	ENSOARP00000002017	Uncharacterized protein.	ABC transporter domain-containing protein.	0.863
ABCB1-2	ABCA1	ENSOARP00000002595	ENSOARP00000007886	ABC transmembrane type-1 domain-containing protein.	ATP binding cassette subfamily A member 1.	0.571
ABCB1-2	ABCA3	ENSOARP00000002595	ENSOARP00000019434	ABC transmembrane type-1 domain-containing protein.	ATP binding cassette subfamily A member 3.	0.468