YTHDF2 protein (Ovis aries) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YTHDF2

YTH N6-methyladenosine RNA binding protein 2. (585 aa)

Predicted Functional Partners:

METTL14

0.920

ALKBH5

0.891

WTAP

0.884

METTL3

0.834

FTO

0.824

RBM15

0.805

RBM15B

0.761

VIRMA

0.746

MAGED1

0.730

PRRC2C

0.685

Your Current Organism:

Ovis aries

NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALKBH5	FTO	ENSOARP00000000712	ENSOARP00000019255	AlkB homolog 5, RNA demethylase.	FTO_NTD domain-containing protein.	0.971
ALKBH5	METTL14	ENSOARP00000000712	ENSOARP00000018512	AlkB homolog 5, RNA demethylase.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.949
ALKBH5	METTL3	ENSOARP00000000712	ENSOARP00000021071	AlkB homolog 5, RNA demethylase.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.874
ALKBH5	RBM15	ENSOARP00000000712	ENSOARP00000020871	AlkB homolog 5, RNA demethylase.	RNA binding motif protein 15.	0.850
ALKBH5	RBM15B	ENSOARP00000000712	ENSOARP00000008320	AlkB homolog 5, RNA demethylase.	RNA binding motif protein 15B.	0.892
ALKBH5	VIRMA	ENSOARP00000000712	ENSOARP00000007962	AlkB homolog 5, RNA demethylase.	Vir like m6A methyltransferase associated.	0.788
ALKBH5	WTAP	ENSOARP00000000712	ENSOARP00000004849	AlkB homolog 5, RNA demethylase.	Uncharacterized protein.	0.971
ALKBH5	YTHDF2	ENSOARP00000000712	ENSOARP00000002865	AlkB homolog 5, RNA demethylase.	YTH N6-methyladenosine RNA binding protein 2.	0.891
FTO	ALKBH5	ENSOARP00000019255	ENSOARP00000000712	FTO_NTD domain-containing protein.	AlkB homolog 5, RNA demethylase.	0.971
FTO	METTL14	ENSOARP00000019255	ENSOARP00000018512	FTO_NTD domain-containing protein.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.889
FTO	METTL3	ENSOARP00000019255	ENSOARP00000021071	FTO_NTD domain-containing protein.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.804
FTO	RBM15	ENSOARP00000019255	ENSOARP00000020871	FTO_NTD domain-containing protein.	RNA binding motif protein 15.	0.749
FTO	RBM15B	ENSOARP00000019255	ENSOARP00000008320	FTO_NTD domain-containing protein.	RNA binding motif protein 15B.	0.678
FTO	VIRMA	ENSOARP00000019255	ENSOARP00000007962	FTO_NTD domain-containing protein.	Vir like m6A methyltransferase associated.	0.719
FTO	WTAP	ENSOARP00000019255	ENSOARP00000004849	FTO_NTD domain-containing protein.	Uncharacterized protein.	0.889
FTO	YTHDF2	ENSOARP00000019255	ENSOARP00000002865	FTO_NTD domain-containing protein.	YTH N6-methyladenosine RNA binding protein 2.	0.824
MAGED1	YTHDF2	ENSOARP00000009976	ENSOARP00000002865	MAGE family member D1.	YTH N6-methyladenosine RNA binding protein 2.	0.730
METTL14	ALKBH5	ENSOARP00000018512	ENSOARP00000000712	Methyltransferase like 14; Belongs to the MT-A70-like family.	AlkB homolog 5, RNA demethylase.	0.949
METTL14	FTO	ENSOARP00000018512	ENSOARP00000019255	Methyltransferase like 14; Belongs to the MT-A70-like family.	FTO_NTD domain-containing protein.	0.889
METTL14	METTL3	ENSOARP00000018512	ENSOARP00000021071	Methyltransferase like 14; Belongs to the MT-A70-like family.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.999