STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NYX3_SHEEPCCHC-type domain-containing protein. (461 aa)    
Predicted Functional Partners:
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.704
W5PEQ9_SHEEP
Uncharacterized protein.
   
 0.692
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.692
LOC105605421
RRM domain-containing protein.
   
 0.692
W5QBE3_SHEEP
RRM domain-containing protein.
   
 0.692
ENSOARP00000020040
annotation not available
   
 0.692
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.569
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.569
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.556
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.547
Your Current Organism:
Ovis aries
NCBI taxonomy Id: 9940
Other names: O. aries, Ovis ammon aries, Ovis orientalis aries, Ovis ovis, domestic sheep, lambs, sheep, wild sheep
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