Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BECN1 | BECN2 | ENSOARP00000003949 | ENSOARP00000005443 | Beclin 1. | Beclin 2. | 0.904 |
BECN1 | HMGB1 | ENSOARP00000003949 | ENSOARP00000018330 | Beclin 1. | Uncharacterized protein. | 0.952 |
BECN1 | TLR4 | ENSOARP00000003949 | ENSOARP00000006210 | Beclin 1. | TIR domain-containing protein; Belongs to the Toll-like receptor family. | 0.476 |
BECN1 | TLR9 | ENSOARP00000003949 | ENSOARP00000006599 | Beclin 1. | Toll-like receptor 9; Key component of innate and adaptive immunity. TLRs (Toll- like receptors) control host immune response against pathogens through recognition of molecular patterns specific to microorganisms. TLR9 is a nucleotide-sensing TLR which is activated by unmethylated cytidine- phosphate-guanosine (CpG) dinucleotides. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Upon CpG stimulation, induces B-cell proliferation, activation, survival and antibody production (By similarity). | 0.486 |
BECN1 | TP53 | ENSOARP00000003949 | ENSOARP00000016707 | Beclin 1. | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. Its pro-apoptotic activity is activated via its intera [...] | 0.703 |
BECN2 | BECN1 | ENSOARP00000005443 | ENSOARP00000003949 | Beclin 2. | Beclin 1. | 0.904 |
BECN2 | HMGB1 | ENSOARP00000005443 | ENSOARP00000018330 | Beclin 2. | Uncharacterized protein. | 0.925 |
ENSOARP00000016348 | HMGB1 | ENSOARP00000016348 | ENSOARP00000018330 | annotation not available | Uncharacterized protein. | 0.679 |
ENSOARP00000016348 | TLR4 | ENSOARP00000016348 | ENSOARP00000006210 | annotation not available | TIR domain-containing protein; Belongs to the Toll-like receptor family. | 0.415 |
ENSOARP00000016348 | TP53 | ENSOARP00000016348 | ENSOARP00000016707 | annotation not available | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. Its pro-apoptotic activity is activated via its intera [...] | 0.448 |
ENSOARP00000017131 | HMGB1 | ENSOARP00000017131 | ENSOARP00000018330 | annotation not available | Uncharacterized protein. | 0.679 |
ENSOARP00000017131 | TLR4 | ENSOARP00000017131 | ENSOARP00000006210 | annotation not available | TIR domain-containing protein; Belongs to the Toll-like receptor family. | 0.415 |
ENSOARP00000017131 | TP53 | ENSOARP00000017131 | ENSOARP00000016707 | annotation not available | Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. Its pro-apoptotic activity is activated via its intera [...] | 0.448 |
HMGB1 | BECN1 | ENSOARP00000018330 | ENSOARP00000003949 | Uncharacterized protein. | Beclin 1. | 0.952 |
HMGB1 | BECN2 | ENSOARP00000018330 | ENSOARP00000005443 | Uncharacterized protein. | Beclin 2. | 0.925 |
HMGB1 | ENSOARP00000016348 | ENSOARP00000018330 | ENSOARP00000016348 | Uncharacterized protein. | annotation not available | 0.679 |
HMGB1 | ENSOARP00000017131 | ENSOARP00000018330 | ENSOARP00000017131 | Uncharacterized protein. | annotation not available | 0.679 |
HMGB1 | HMGB2 | ENSOARP00000018330 | ENSOARP00000011134 | Uncharacterized protein. | Uncharacterized protein. | 0.683 |
HMGB1 | LY96 | ENSOARP00000018330 | ENSOARP00000006827 | Uncharacterized protein. | Lymphocyte antigen 96. | 0.730 |
HMGB1 | TLR2 | ENSOARP00000018330 | ENSOARP00000016139 | Uncharacterized protein. | Toll-like receptor 2; Cooperates with LY96 to mediate the innate immune response to bacterial lipoproteins and other microbial cell wall components. Cooperates with TLR1 or TLR6 to mediate the innate immune response to bacterial lipoproteins or lipopeptides. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response (By similarity). May also promote apoptosis in response to lipoproteins. Forms activation clusters composed of several receptors depending on the ligand, these clusters trigger signaling from the cell surface and subsequentl [...] | 0.699 |
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