STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETA80817.1Hypothetical protein. (234 aa)    
Predicted Functional Partners:
ETA79500.1
Hypothetical protein.
  
  
  0.948
ETA82201.1
Diguanylate cyclase.
 
 0.947
ETA79078.1
Glutamate synthase.
    
 0.904
ETA79589.1
Pyruvate-flavodoxin oxidoreductase.
    
 0.845
ETA80832.1
Hypothetical protein.
   
 
 0.810
ETA80725.1
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Belongs to the pyruvate kinase family.
  
 0.804
ETA80858.1
Hypothetical protein.
  
  
  0.799
ETA79778.1
Aldehyde oxidoreductase.
    
 0.798
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.797
ETA79488.1
Copper chaperone.
 
    0.787
Your Current Organism:
Youngiibacter fragilis
NCBI taxonomy Id: 994573
Other names: Clostridium sp. 232.1, Y. fragilis 232.1, Youngiibacter fragile 232.1, Youngiibacter fragilis 232.1
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