STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETA80555.1Virulence-associated protein E. (782 aa)    
Predicted Functional Partners:
ETA80554.1
Nuclease.
 
     0.863
ETA80558.1
Transcriptional regulator.
 
     0.854
ETA82299.1
Hypothetical protein.
 
     0.751
ETA79999.1
XRE family transcriptional regulator.
 
     0.742
ETA82302.1
XRE family transcriptional regulator.
 
     0.741
ETA81002.1
XRE family transcriptional regulator.
 
     0.719
ETA79997.1
Hypothetical protein.
 
     0.709
ETA80003.1
Nuclease.
 
     0.687
ETA80998.1
Nuclease.
 
     0.684
ETA81004.1
Hypothetical protein.
 
     0.668
Your Current Organism:
Youngiibacter fragilis
NCBI taxonomy Id: 994573
Other names: Clostridium sp. 232.1, Y. fragilis 232.1, Youngiibacter fragile 232.1, Youngiibacter fragilis 232.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.