ETA80469.1 protein (Youngiibacter fragilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ETA80469.1

Hypothetical protein. (132 aa)

Predicted Functional Partners:

ETA80470.1

0.903

ETA80471.1

0.816

ETA80468.1

0.787

ETA80467.1

0.783

ETA80466.1

0.610

ETA80582.1

0.590

ETA80641.1

0.590

ETA80473.1

0.468

ETA80472.1

0.451

ETA80464.1

0.425

Your Current Organism:

Youngiibacter fragilis

NCBI taxonomy Id: 994573
Other names: Clostridium sp. 232.1, Y. fragilis 232.1, Youngiibacter fragile 232.1, Youngiibacter fragilis 232.1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ETA80464.1	ETA80466.1	T472_0211920	T472_0211930	Capsid protein.	DNA-binding protein.	0.476
ETA80464.1	ETA80467.1	T472_0211920	T472_0211935	Capsid protein.	DNA-packaging protein.	0.659
ETA80464.1	ETA80468.1	T472_0211920	T472_0211940	Capsid protein.	Head-tail adaptor protein.	0.666
ETA80464.1	ETA80469.1	T472_0211920	T472_0211945	Capsid protein.	Hypothetical protein.	0.425
ETA80464.1	ETA80470.1	T472_0211920	T472_0211950	Capsid protein.	Hypothetical protein.	0.435
ETA80464.1	ETA80471.1	T472_0211920	T472_0211955	Capsid protein.	Tail protein.	0.429
ETA80466.1	ETA80464.1	T472_0211930	T472_0211920	DNA-binding protein.	Capsid protein.	0.476
ETA80466.1	ETA80467.1	T472_0211930	T472_0211935	DNA-binding protein.	DNA-packaging protein.	0.610
ETA80466.1	ETA80468.1	T472_0211930	T472_0211940	DNA-binding protein.	Head-tail adaptor protein.	0.610
ETA80466.1	ETA80469.1	T472_0211930	T472_0211945	DNA-binding protein.	Hypothetical protein.	0.610
ETA80466.1	ETA80470.1	T472_0211930	T472_0211950	DNA-binding protein.	Hypothetical protein.	0.610
ETA80466.1	ETA80471.1	T472_0211930	T472_0211955	DNA-binding protein.	Tail protein.	0.610
ETA80467.1	ETA80464.1	T472_0211935	T472_0211920	DNA-packaging protein.	Capsid protein.	0.659
ETA80467.1	ETA80466.1	T472_0211935	T472_0211930	DNA-packaging protein.	DNA-binding protein.	0.610
ETA80467.1	ETA80468.1	T472_0211935	T472_0211940	DNA-packaging protein.	Head-tail adaptor protein.	0.930
ETA80467.1	ETA80469.1	T472_0211935	T472_0211945	DNA-packaging protein.	Hypothetical protein.	0.783
ETA80467.1	ETA80470.1	T472_0211935	T472_0211950	DNA-packaging protein.	Hypothetical protein.	0.783
ETA80467.1	ETA80471.1	T472_0211935	T472_0211955	DNA-packaging protein.	Tail protein.	0.788
ETA80467.1	ETA80472.1	T472_0211935	T472_0211960	DNA-packaging protein.	Hypothetical protein.	0.451
ETA80468.1	ETA80464.1	T472_0211940	T472_0211920	Head-tail adaptor protein.	Capsid protein.	0.666