STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ETA79109.1C4-dicarboxylate ABC transporter permease. (428 aa)    
Predicted Functional Partners:
ETA79108.1
Hypothetical protein.
 
 0.988
ETA79107.1
C4-dicarboxylate ABC transporter substrate-binding protein.
  
 0.961
ETA79325.1
C4-dicarboxylate ABC transporter permease.
 
 0.949
ETA79326.1
Hypothetical protein.
  
 0.946
ETA80901.1
Hypothetical protein.
 
 0.942
ETA82583.1
C4-dicarboxylate ABC transporter substrate-binding protein.
 
 0.936
ETA80900.1
Hypothetical protein.
  
 0.845
ETA82584.1
ABC transporter substrate-binding protein.
  
 0.833
ETA79505.1
Hypothetical protein.
 
 0.832
ETA79589.1
Pyruvate-flavodoxin oxidoreductase.
    
  0.826
Your Current Organism:
Youngiibacter fragilis
NCBI taxonomy Id: 994573
Other names: Clostridium sp. 232.1, Y. fragilis 232.1, Youngiibacter fragile 232.1, Youngiibacter fragilis 232.1
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