STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN88416.1Type I phosphodiesterase / nucleotide pyrophosphatase. (376 aa)    
Predicted Functional Partners:
SFN68611.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
    
  0.733
SFN88435.1
DNA gyrase subunit A.
       0.703
SFN96668.1
Hypothetical protein.
   
 0.588
dcd
dCTP deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
  
  
  0.517
SFN71682.1
5'-nucleotidase.
    
 0.514
SFN57807.1
NAD-dependent protein deacetylase, SIR2 family.
 
  
  0.505
SFN95432.1
UDPglucose--hexose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
  
  
  0.501
SFO04283.1
Adenosine deaminase.
     
 0.495
SFN52974.1
Starch phosphorylase.
     
 0.484
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
    
 0.470
Your Current Organism:
Mycetocola miduiensis
NCBI taxonomy Id: 995034
Other names: CGMCC 1.11101, M. miduiensis, Mycetocola miduiensis Zhu et al. 2013, Mycetocola sp. CGMCC 1.11101, NBRC 107877, strain MD-T1-10-2
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