STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT43100.1Transcriptional regulator, LacI family. (367 aa)    
Predicted Functional Partners:
SFT94412.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.863
SFT35781.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.725
SFT84329.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
    
   0.613
SFT65633.1
Phosphocarrier protein.
   
   0.578
SFT96422.1
Phosphocarrier protein.
   
   0.578
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.574
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
   0.550
SFT52576.1
Hypothetical protein.
  
   0.541
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.528
SFT85789.1
2-oxoisovalerate dehydrogenase E1 component.
    
   0.451
Your Current Organism:
Actinopolyspora righensis
NCBI taxonomy Id: 995060
Other names: A. righensis, Actinopolyspora righensis Meklat et al. 2014 emend. Nouioui et al. 2018, Actinopolyspora sp. H23, CCUG 63368, DSM 45501, MTCC 11562, strain H23
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