STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT48712.1Uncharacterized conserved protein YukE; Belongs to the WXG100 family. (109 aa)    
Predicted Functional Partners:
SFT48707.1
YbaB/EbfC DNA-binding family protein.
       0.773
SFT48728.1
Protein of unknown function.
       0.773
SFT35314.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
   
   0.555
SFT45998.1
FtsK/SpoIIIE family protein.
   
   0.555
SFT58483.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
   
   0.555
SFT67168.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
   
   0.555
SFT48679.1
hydroxymethylglutaryl-CoA lyase.
       0.480
SFT48690.1
Adenosylcobinamide amidohydrolase.
       0.480
SFT48772.1
Hypothetical protein.
       0.418
Your Current Organism:
Actinopolyspora righensis
NCBI taxonomy Id: 995060
Other names: A. righensis, Actinopolyspora righensis Meklat et al. 2014 emend. Nouioui et al. 2018, Actinopolyspora sp. H23, CCUG 63368, DSM 45501, MTCC 11562, strain H23
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