STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT86837.1Transcriptional regulator, IclR family. (267 aa)    
Predicted Functional Partners:
SFT86794.1
Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.811
SFT86823.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
 
  
 0.804
SFT86806.1
Protocatechuate 3,4-dioxygenase alpha subunit.
 
    0.803
SFT86820.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
     0.779
SFT95220.1
Transcriptional regulator, IclR family.
  
     0.726
SFT86767.1
Glutaconate CoA-transferase subunit A.
 
    0.714
SFT86773.1
Glutaconate CoA-transferase subunit B.
 
    0.711
SFT86782.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
  0.667
SFT75926.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.492
SFT75933.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.458
Your Current Organism:
Actinopolyspora righensis
NCBI taxonomy Id: 995060
Other names: A. righensis, Actinopolyspora righensis Meklat et al. 2014 emend. Nouioui et al. 2018, Actinopolyspora sp. H23, CCUG 63368, DSM 45501, MTCC 11562, strain H23
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