STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT97386.1N-6 DNA Methylase. (718 aa)    
Predicted Functional Partners:
SFT72078.1
Type I restriction modification DNA specificity domain-containing protein.
 
 
0.990
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
   0.586
SFT97375.1
DNA-sulfur modification-associated.
       0.544
SFT97400.1
Superfamily II DNA or RNA helicase, SNF2 family.
     
 0.534
SFT55626.1
Subtilisin inhibitor-like; Belongs to the protease inhibitor I16 (SSI) family.
  
     0.513
SFT97415.1
Hypothetical protein.
       0.495
SFT60283.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
  
 
   0.454
SFT75736.1
Protein of unknown function.
  
     0.441
SFT98140.1
Hypothetical protein.
  
  
 0.417
SFT75834.1
SRSO17 transposase.
   
    0.416
Your Current Organism:
Actinopolyspora righensis
NCBI taxonomy Id: 995060
Other names: A. righensis, Actinopolyspora righensis Meklat et al. 2014 emend. Nouioui et al. 2018, Actinopolyspora sp. H23, CCUG 63368, DSM 45501, MTCC 11562, strain H23
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