STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ08682.1Peroxiredoxin Q/BCP. (150 aa)    
Predicted Functional Partners:
SDQ36291.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.724
SDQ08698.1
Protease I.
   
   0.559
trpC
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
 
  0.511
SDQ08665.1
Serine/threonine protein kinase.
       0.487
SDQ73537.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
   
0.469
SDR19248.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.463
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
    
  0.460
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
  
 
  0.455
Your Current Organism:
Actinopolyspora saharensis
NCBI taxonomy Id: 995062
Other names: A. saharensis, Actinopolyspora saharensis Meklat et al. 2013 emend. Nouioui et al. 2018, Actinopolyspora sp. H32, CCUG 62966, DSM 45459, strain H32
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