STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ69847.1DNA-binding transcriptional regulator, FadR family. (235 aa)    
Predicted Functional Partners:
SDQ69822.1
MFS transporter, CP family, cyanate transporter.
 
     0.656
SDR09591.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.655
SDQ28508.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.646
SDQ19112.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.627
SDQ40160.1
DNA-binding transcriptional regulator, GntR family; Manually curated.
  
  
 0.613
SDQ39317.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.607
SDQ23425.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.596
SDQ40966.1
DNA-binding transcriptional regulator, FadR family.
  
     0.550
SDQ28697.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.547
SDQ08825.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.543
Your Current Organism:
Actinopolyspora saharensis
NCBI taxonomy Id: 995062
Other names: A. saharensis, Actinopolyspora saharensis Meklat et al. 2013 emend. Nouioui et al. 2018, Actinopolyspora sp. H32, CCUG 62966, DSM 45459, strain H32
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.