STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY32050.1Carotene isomerase; PFAM: FAD dependent oxidoreductase; TIGRFAM: carotene isomerase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076:IPR014101; KEGG: npu:Npun_R4225 phytoene dehydrogenase-related protein; PFAM: FAD dependent oxidoreductase; PRIAM: All-trans-retinol 13,14-reductase; SPTR: Putative uncharacterized protein; TIGRFAM: Carotene isomerase. (500 aa)    
Predicted Functional Partners:
AFY34667.1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
 
  
 0.973
AFY31145.1
KEGG: npu:Npun_R4207 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.955
AFY32865.1
Hypothetical protein; COGs: COG0644 Dehydrogenase (flavoprotein); KEGG: npu:Npun_R4002 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.927
AFY34025.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; COGs: COG3349 conserved hypothetical protein; InterPro IPR002937:IPR014102; KEGG: naz:Aazo_2875 phytoene desaturase; PFAM: Amine oxidase; PRIAM: Carotene 7,8-desaturase; SPTR: Phytoene desaturase; TIGRFAM: Phytoene desaturase.
 
  
 0.878
AFY34026.1
PFAM: Squalene/phytoene synthase; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: ava:Ava_4794 phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Phytoene synthase; manually curated.
 
  
 0.828
AFY36234.1
Protoporphyrin IX magnesium-chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.725
AFY35238.1
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: TIGR04168 family protein; InterPro IPR004843; KEGG: npu:Npun_F6453 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase.
  
     0.707
AFY30904.1
Geranylgeranyl reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: geranylgeranyl reductase; geranylgeranyl reductase family; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR002938:IPR010253:IPR011774:IPR011777; KEGG: ava:Ava_1497 geranylgeranyl reductase; PFAM: Monooxygenase, FAD-binding; SPTR: Geranylgeranyl hydrogenase; TIGRFAM: Geranylgeranyl reductase, plant/cyanobacteria; Geranylgeranyl reductase; Geranylgeranyl reductase, plant/prokaryotic.
 
  
 0.706
AFY35584.1
Chlorophyll synthase; PFAM: UbiA prenyltransferase family; TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; chlorophyll synthase, ChlG; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537:IPR011799:IPR006372; KEGG: ana:all4480 bacteriochlorophyll/chlorophyll a synthase; PFAM: UbiA prenyltransferase; PRIAM: Chlorophyll synthase; SPTR: Chlorophyll synthase 33 kD subunit; TIGRFAM: Chlorophyll synthase, ChlG; Bacteriochlorophyll/chlorophyll synthetase.
 
  
 0.706
AFY32295.1
PFAM: Protein of unknown function (DUF3067); KEGG: npu:Npun_F0133 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.703
Your Current Organism:
Calothrix sp. PCC7507
NCBI taxonomy Id: 99598
Other names: C. sp. PCC 7507, Calothrix sp. PCC 7507
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