Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFY32642.1 | AFY32643.1 | Cal7507_2203 | Cal7507_2204 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | PFAM: Aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; histidinol-phosphate aminotransferase; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR005860; KEGG: npu:Npun_F5011 threonine-phosphate decarboxylase; PFAM: Aminotransferase, class I/classII; SPTR: Putative L-threonine-O-3-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase. | 0.718 |
| AFY32642.1 | AFY34974.1 | Cal7507_2203 | Cal7507_4608 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.534 |
| AFY32642.1 | AFY36062.1 | Cal7507_2203 | Cal7507_5741 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: ava:Ava_2170 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family. | 0.597 |
| AFY32642.1 | AFY36300.1 | Cal7507_2203 | Cal7507_5990 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | KEGG: npu:Npun_F5230 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.529 |
| AFY32642.1 | dnaA | Cal7507_2203 | Cal7507_0001 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.572 |
| AFY32642.1 | rplS | Cal7507_2203 | Cal7507_1888 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.615 |
| AFY32642.1 | rpmF | Cal7507_2203 | Cal7507_4836 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: ava:Ava_3613 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.601 |
| AFY32642.1 | rpsO | Cal7507_2203 | Cal7507_1070 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.684 |
| AFY32642.1 | rpsT | Cal7507_2203 | Cal7507_3098 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.787 |
| AFY32642.1 | tuf | Cal7507_2203 | Cal7507_2932 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.522 |
| AFY32643.1 | AFY32642.1 | Cal7507_2204 | Cal7507_2203 | PFAM: Aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; histidinol-phosphate aminotransferase; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839:IPR005860; KEGG: npu:Npun_F5011 threonine-phosphate decarboxylase; PFAM: Aminotransferase, class I/classII; SPTR: Putative L-threonine-O-3-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase. | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.718 |
| AFY34974.1 | AFY32642.1 | Cal7507_4608 | Cal7507_2203 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.534 |
| AFY34974.1 | AFY36300.1 | Cal7507_4608 | Cal7507_5990 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | KEGG: npu:Npun_F5230 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.406 |
| AFY34974.1 | rplS | Cal7507_4608 | Cal7507_1888 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.540 |
| AFY34974.1 | rpmF | Cal7507_4608 | Cal7507_4836 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: ava:Ava_3613 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.539 |
| AFY34974.1 | rpsO | Cal7507_4608 | Cal7507_1070 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.577 |
| AFY34974.1 | tuf | Cal7507_4608 | Cal7507_2932 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.465 |
| AFY36062.1 | AFY32642.1 | Cal7507_5741 | Cal7507_2203 | PFAM: Bacterial regulatory proteins, lacI family; family; COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: ava:Ava_2170 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family. | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.597 |
| AFY36300.1 | AFY32642.1 | Cal7507_5990 | Cal7507_2203 | KEGG: npu:Npun_F5230 hypothetical protein; SPTR: Putative uncharacterized protein. | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.529 |
| AFY36300.1 | AFY34974.1 | Cal7507_5990 | Cal7507_4608 | KEGG: npu:Npun_F5230 hypothetical protein; SPTR: Putative uncharacterized protein. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.406 |
page 1 of 3